General Information
This year's CSI will provide our postdocs and graduate theme participants with hands-on instruction in open source tools for collaborative coding and data management, analysis, visualization, and dissemination with a focus on using SESYNC infrastructure. The goals of the workshop are to learn new skills, advance work on team projects, and get familiar with our CI.
Updates will be posted to this website as they become available.
Instructors: Kelly Hondula, Philippe Marchand, Mary Shelley, Mike Smorul
Assistants: Nick Magliocca
Requirements: Participants must bring a laptop.</strong>
Contact: Please email mshelley@sesync.org for questions and information not covered here.
Etherpad: https://etherpad.mozilla.org/fBqIr3TFrT
Teaching Materials
https://github.com/SESYNC-ci/CSI-2015</a>
Acknowledgements & Support
Portions of the instructional materials are adopted from Data Carpentry and Software Carpentry. The structure of the curriculum as well as the teaching style are informed by Software Carpentry.
Schedule (tentative)
We'll have coffee and snack breaks at 10:30am and 3:30pm daily.
SESYNC is providing lunch on site; attendees are responsible for their own breakfast and dinner arrangements (we can make recommendations)
| Monday | 9:00am | Welcome and overview of SESYNC CI |
| 9:15 | R and how to use RStudio Server | |
| 10:30 | Break | |
| 10:45 | Intro to relational databases and SQL (from within R) | |
| 12:30pm | Lunch | |
| 1:30 | Intro to git and gitlab and data munging with tidyr and plyr | |
| 3:30 | Break | |
| 4:00 | ggplot, wrap up/Q&A | |
| 5:00 | Reception (informal with snacks, tasty beverages, etc.) | |
| Tuesday | 9:00am | Tools for disseminating results, code, and data (including R Shiny) |
| 10:30 | Break | |
| 10:45 | Consulting/hacking | |
| 12:30pm | Lunch | |
| 1:30 | Attendee choice: submitting jobs to the cluster OR geo data with R | |
| 3:30 | Break | |
| 3:45 | Consulting/hackng | |
| Wednesday | 9:00am | Consulting/Hacking/Additional instruction as desired |
